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13_questions_of_shell

shell十三问--shell教程（markdown 版本）

2020-advanced_single_cell_rna_seq

Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.

abis

alignqc

Generate a report on sequencing alignments to understand read alignments vs read sizes, error patterns in reads, annotations and rarefractions.

angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2020

awk-sed

awk 与 sed 学习，包括了知识点介绍，和一些习题练习

bioinformatics-training-collection

A collection of resources for learning about tools and languages related to Bioinformatics

books

:books: Books worth reading

bsmap

Unofficial repo for software vendoring or packaging purposes

cdna_cupcake

Miscellaneous collection of Python and R scripts for processing sequencing data

chip-seq-pipeline

ENCODE Uniform processing pipeline for ChIP-seq

chrvis

Visualize genes on chromesome

circlize

Circular visualization in R

circosjs

d3 library to build circular graphs

cnspipeline

comparative-annotation-toolkit

complexheatmap

make complex heatmaps as well as self define annotation graphics

dataviz

A book covering the fundamentals of data visualization.

dea.r

Script to automate differential expression analysis using DESeq2, edgeR or limma-voom

discomark

Discovery of phylogenetic markers from whole-genome data

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

enrichedheatmap

make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.

excelgesis

Critical explanation or interpretation of ... Excel spreadsheets

falcon-phase

FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create fully phased, diploid, chromosome-scale scaffolds

farver

Vectorised Colour Conversion and Comparison

fcuk

A R package designed to help people with clumsy fingers.

fibernetwork

WGCNA analysis using Fiber RNA seq data

flair

Full-Length Alternative Isoform analysis of RNA

gg3d

A ggplot2 extension enabling 3D projections