The pipeline was developed for automatically detecting centromere areas of chromosomes of a T2T assembly geneome.
Furthermore, it can also be used for analyzing retrotransposon, repeat monomer and so on.
If you want to analyze retrotransposon, you need to download a database file before analyzing.
For Chinese users, you can download the related file (based on the relationships of your studied species) from the website of https://www.aliyundrive.com/s/v2dCXgU55jr. For others, you can download the <fasta> file from the website of https://bioinformatics.um6p.ma/PlantLTRdb/data/download/.