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View Code? Open in Web Editor NEWGenerate graph representations of protein binding sites.
License: MIT License
Generate graph representations of protein binding sites.
License: MIT License
In current version users have to get in python to get help info.
Implement the command line help info.
Verify if graphsite supports networkx. If not, make corresponding updates.
In current version, it is mandatory for users to provide .profile
file for sequence entropy, and .popsa
file for solvent-accessible surface area as node features.
Simple modification can be made such that providing these two files are optional.
This package currently only supports .mol2
file as input. It may be improved to support other input formats such as .pdb
.
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