shians Goto Github PK

scater

Clone of the Bioconductor repository for the scater package, see https://bioconductor.org/packages/devel/bioc/html/scater.html for the official development version.

scbenchdata

scico

Palettes for R based on the Scientific Colour-Maps

sciva

R package and web-tool for interactive visualisation and analysis of single cell RNA-Seq data

sclvm

scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources of variation.

scpipe

a pipeline for single cell RNA-seq data analysis

scpipecpp

a C++ pipeline for scRNA-seq processing

scrna-tools

Table of software for the analysis of single-cell RNA-seq data.

seqan

SeqAn's official repository.

seqdotplot

seurat

R toolkit for single cell genomics

shians.github.io

shians_ggplot_themes

sigma

singlecellexperiment

Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.

splatter

Simple simulation of single-cell RNA sequencing data

star

RNA-seq aligner

statistical-machine-learning-project

Character Recognition from Historical Documents

string_map

A very lightweight wrapper for C++ unordered_maps in Rcpp to map from strings to strings.

stringr

A fresh approach to string manipulation in R

summerviz

sunburstr

R htmlwidget for sequence sunburst

supercell

Coarse-graining of large single-cell RNA-seq data into metacells

sva-devel

testthat

An R package to make testing fun

tombo

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

trie

ubit2

User-friendly Bioinformatics Tools

umis

Tools for processing UMI RNA-tag data

upset

UpSet - Visualizing Intersecting Sets