Comments (4)
Of course, right after I post this, the ETA is suddenly defined. Guess that it only shows up after a sufficient number of files have been processed? (12 in my case)
from kmcp.
Oh, it's strange. It should be updated right after one index file been saved.
BTW, K-mer file processing and index writing are asynchronous. That means while block 11 and 12 being procesing, the index file of block 10 might not finished writing. One possible reason is the disk (NAS?) is to slow for writing big index files.
You can add --dry-run to check the size of each index file before really executing index buiding.
from kmcp.
Could be that writing the blocks just took that long (for the first block to finish writing and produce an ETA)?
from kmcp.
Yes, that's what I mean. The speed depends on the size of a index file and disk speed.
from kmcp.
Related Issues (20)
- reporting proportion of unmatched reads HOT 4
- Profiling output table interpretation HOT 3
- kmcp search is very slow for metatranscriptome data HOT 6
- CowTransfer link doesn't work HOT 3
- KMCP database building tutorial HOT 3
- Dealing with novel/non-sequenced species HOT 2
- long read metagenomic profiling HOT 2
- suitable for CDS and/or contig taxonomic assignment? HOT 2
- Masking prophages in bacterial genomes before building database as Phanta does HOT 2
- How to specify multiple kmer values HOT 2
- Add a tutorial of detecting specific pathogen in sequencing data HOT 1
- Detecting closest reference in custom DB HOT 4
- Report statistics of matched, unmatched reads HOT 1
- KMCP's MetaPhlAn output doesn't follow the MetaPhlAn file format HOT 3
- [Suggestion] Use score calibration when identifying proviruses and plasmids HOT 2
- Merge error (number of fields < query index field) HOT 3
- Optimizing KMCP with HumGut HOT 9
- Kmcp profile empty HOT 2
- TODO: save the search result into a serializing binary file for fast downstream parsing HOT 3
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