Shan Shen's Projects
Data pipeline for Gao et al., 2018 from Li Lab.
A collection of IPython notebooks from a graduate-level statistics course run by Tom Wallis and Philipp Berens
GUI demos using python packages
DataJoint pipeline for IBL project
A light version of IBL pipeline that allows users to access datajoint tables.
IBL core shared libraries
Introduction to Statistics using Python
Calcium imaging pipeline for paper Li 2015
Mesoscale activity ephys ingest schema
Svoboda lab schema
Pipeline for microscope management
MATLAB suite for model building and model fitting.
MySQL API for MATLAB with support for BLOB objects
Workshop material from DataJoint NeuroNex Workshop 2018
Repository for collecting materials from nwb hackathons
Odor experiment pipeline for meso
A proposal for data standardization in neurophysiology
codes for optimal simple project
all analysis code to reproduce the behavior paper (in prep)
A generic REST API server backend for DataJoint pipelines.
Schemata and libraries for neuroscientific data
Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples
Materials for Princeton Workshop Feb 13-15, 2019
Repository for Programming Assignment 2 for R Programming on Coursera