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eit-cdae-algorithm's Introduction

EIT-cdae-algorithm

This repository contains:

  1. The models for EIT image reconstruction which is published in EIT-CDAE and follow-up work.

  2. Database constructed for training.

Table of Contents

Models

The architecture of EIT image reconstruction networks, which contains: EIT-CDAE(model A), network to denoise measurement matrix(model B) and U-net for EIT image reconstruction.image

Dataset-generation

There are 2 choices of datasets: using open-source dataset: montreal dataset of EIDORS or generate simulated dataset. Both need to use EIDORS toolkit. To generate the dataset, you need run data_gen.m in dataset file. An instance of images processed is as below:

image

Train

The CDAE-EIT model was built using Tensorflow, please read detail in

code/cdae.py

The network to denoise measurement matrix(model B) was built using Tensorflow. This model using measurement matrix from open-source dataset with additional noise as input, original data as output. Then the denoised data can be used to reconstruct EIT images. Please read details in

code/matricDN.py

U-net for EIT image reconstruction was built using Tensorflow, details in:

code/U-net.py

Performance

  • CDAE:

    1. Train and test the CDAE model with constructed database. The reconstructed images are as following:

​ 2. Testing results of the model with open-source database: Montreal database:

  • results of the matrix denoise model :

​ (a): Original image; (b) Image with additional noise; (c): Results of the model's output

  • U-net

    ​ 1. Results of constructed database

​ 2. Results of open-source database

Authors

  • Yue Gao
  • Yewangqing Lu
  • Hui Li
  • Boxiao Liu
  • Mingyi Chen
  • Guoxing Wang
  • Yong Lian
  • Yongfu Li*

License

Please cite these papers if you have used part of this work.

GAO Y, LU Y, LI H, et al. EIT-CDAE: a 2-D electrical impedance tomography image reconstruction method based on auto encoder technique[C]. IEEE Biomedical Circuits & Systems Conference, 2019: 1-4.
GAO Y, LIU B, LI H, et al. Live Demonstration: a pulmonary conditions monitor based on electrical impedance tomography measurement[C]. International Symposium on Circuits and Systems, 2019: 1-1.

eit-cdae-algorithm's People

Contributors

sameeng avatar yongfu-li avatar

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