shahcompbio Goto Github PK
Name: ShahCompBio
Type: Organization
Bio: Computational biology tools from the Shah Lab
Name: ShahCompBio
Type: Organization
Bio: Computational biology tools from the Shah Lab
Docker Apache Airflow
Docker files for Alhena
Local version of Alhena dashboard
Loader for Alhena
Alhena loader for IGO
Hidden Markov model (HMM) for predicting somatic loss of heterozygosity and allelic imbalance in whole tumour genome sequencing data.
Docs for viz projects
A Nextflow pipeline to process single-cell datasets
RNA seq analysis pipeline for alignment and quantification of bulk illumina data
Pipeline for processing bulk RNAseq data
Tools for generating and manipulating data files in the formats required by cBioPortal.
Front-end library visualization for Colossus
Classifier of cell cycle state from DLP+ data
Visualization tool for integrating single cell phylogeny with genomic content to clearly display evolutionary progression and tumour heterogeneity.
Classify Copy Number Amplifications and Deletions
Classify Copy Number Amplifications and Deletions
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Shah lab data management docs
QC utils for DLP data
Collection of Standard Operating Procedures (SOPs) for DLP+
doubleTime is a method to estimate the timing of whole-genome doubling event(s) on a clone tree using SNVs
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.