Sara JC Gosline's Projects
This repository focuses on the NTAP-funded analysis regarding plexiform neurofibroma cell lines.
Prelude is an enhanced Emacs 24 distribution that should make your experience with Emacs both more pleasant and more powerful.
Workflows for processing rare disease data on Synapse.
This repo is founded on the prediction of mutational signature from gene expression.
Clone me to create your Manubot manuscript
In-progress and example CWL tools/workflows
Simultaneous Analysis of Multiple Networks tool designed to identify key proteins undetected by high throughput biochemical experiments.
An service to auto provision resources on AWS scicomp
Work on data models and APIs for Genomic data.
An service to auto provision resources on AWS scicomp
Created docker image, CLI, and CWL workflow to enable the qc tool to be called remotely.
A reference implementation of the APIs defined in the schemas repository.
Tools and workflows for single cell RNAseq
CWL tools for wrapping other tools with Synapse download and upload steps.
Sage Bionetworks derived standards for annotating content in Synapse.
Programmatic interface to Synapse services for Python
Integrative modeling of proteomics and radiomics of tumor draining lymph nodes
Identification of transcriptional regulators from changing microRNA and mRNA levels