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Sara JC Gosline's Projects

awesome-single-cell icon awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

comet icon comet

CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer

dropest icon dropest

Pipeline for initial analysis of droplet-based single-cell RNA-seq data

eloml icon eloml

R package EloML: Elo rating system for machine learning models

fendr icon fendr

Current workspace for development of drug efficacy prediction based on omic data

garnet-deprecated icon garnet-deprecated

TF-DNA interaction prediction using chromatin accessibility files. This repo has now been moved to part of the larger garnet+forest package.

genie icon genie

Validation and processing of GENIE files: https://www.synapse.org/genie

hyphalnet icon hyphalnet

Basic implementation of community detection in networks

leidenalg icon leidenalg

Implementation of the Leiden algorithm for various quality functions to be used with igraph in Python.

louvain-igraph icon louvain-igraph

Implementation of the Louvain algorithm for community detection with various methods for use with igraph in python.

nexus icon nexus

Neurofibromatosis EXperiment Unification Site

pandas icon pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

pcst_fast icon pcst_fast

A fast implementation of the Goemans-Williamson scheme for the prize-collecting Steiner tree / forest problem.

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