selimnairb / rhessysworkflows Goto Github PK

If binary for current platform isn't available, compile it.

Acquire MODIS data from SOAP web service provided by ORNL DAAC:

http://daac.ornl.gov/MODIS/MODIS-menu/modis_webservice.html

If you get an error message similar to:

Downloading/unpacking pytz (from OWSLib)
Could not find a version that satisfies the requirement pytz (from OWSLib) (from versions: 2007i, 2009j, 2011e, 2009u, 2009r, 2009i, 2005m, 2010h, 2013b, 2011c, 2010k, 2012b, 2009g, 2010g, 2012g, 2012f, 2009f, 2010b, 2009d, 2006g, 2009e, 2011j, 2009i, 2010e, 2007d, 2008c, 2008h, 2008i, 2011n, 2005m, 2011e, 2010l, 2009p, 2008h, 2010b, 2009u, 2008c, 2006j, 2009f, 2005m, 2009g, 2010g, 2010h, 2007c, 2009i, 2007k, 2008g, 2009j, 2007i, 2008i, 2006p, 2009p, 2010k, 2007f, 2008i, 2008g, 2007d, 2010l, 2007k, 2007g, 2009g, 2007c, 2009n, 2009e, 2008a, 2006g, 2009a, 2010l, 2007k, 2007c, 2009r, 2009p, 2006j, 2011j, 2006g, 2009n, 2009u, 2005k, 2007i, 2011b, 2013b, 2005k, 2006p, 2010b, 2005r, 2006j, 2009n, 2009l, 2008h, 2009d, 2008b, 2010o, 2008b, 2011k, 2009a, 2009r, 2010k, 2007f, 2008a, 2008a, 2008b, 2009e, 2007d, 2011g, 2005r, 2012c, 2011c, 2012g, 2011n, 2011g, 2010h, 2011k, 2012d, 2009f, 2010g, 2011e, 2012c, 2008c, 2007g, 2012c, 2009l, 2011n, 2012g, 2012j, 2009a, 2009l, 2011h, 2012f, 2010e, 2011g, 2012j, 2011d, 2010e, 2011c, 2012j, 2005k, 2011d, 2007g, 2012f, 2011j, 2012b, 2013d, 2009d, 2005r, 2010o, 2013b, 2011k, 2006p, 2013d, 2012d, 2012h, 2011h, 2012d, 2011h, 2008g, 2009j, 2007f, 2012b, 2011d, 2012h, 2013d, 2010o, 2004b)
Cleaning up...
No distributions matching the version for pytz (from OWSLib)
Storing complete log in /Users/miles/.pip/pip.log

Try installing using the "--pre" option:

sudo pip install --pre rhessysworkflows

The roof problem is caused by a package that rhessysworkflows depends on, and is described here: selimnairb/EcohydroLib#4

With luck the broken package will be fixed, requiring no changes to rhessysworkflows/ecohydrolib.

vegetation parameters, e.g., CN, stemc_leafc ratio, SLA,... etc in both allometric file and veg.def in the database are in-consistent, specially the non-veg and evergreen.

Scripts need to support file paths with escaped spaces.

Add option to CreateWorldfile to skip template generation if a template already exists.

Data needed (should be in GIS files with required fields/info)

1. Conduit (shp file)
   • ID
   • Diameter
   • Upstream Junction ID
   • Upstream Invert elevation
   • Downstream Junction ID
   • Downstream Invert elevation
   • Length
2. Junctions (shp file)
   • ID
3. Inlets (shp file)
   • ID
4. Watershed (shp file)
   • Boundary
5. Impervious Data
   • Imperviousness
6. DEM
7. Soil data (shp file)
   • Soil type
   • Soil class
   • Mean Effective Porosity qe
   • std Mean Effective Porosity qe
   • mean suction [cm/hr]
   • std suction
   • hydra conductivity K [cm]
8. Landuse Data

Old .o and binary files should be removed before compilation is attempted.

Added tests for wcs4dem

RHESSysPlotMassbalance.py fails when observed data has a blank line at the end of file.

Example command line:

RHESSysPlotMassbalance.py -n test_massbalance -o Baisman_data/RHESSys_USGS_01583580_Baisman-20070101_20130930.txt -d Baisman_10m/rhessys/output/test/rhessys_basin.daily -t "Massbalance - Baisman 10-m test" --figureX 8 --figureY 6 --color

Suggestion. The grep to check for nan after the creation of a world file should be embedded in it with a warning printed if nan is encountered so simplify the flow for a user.

1. On a PC unzipping is a two step process. The first unzip results in the file RHESSysWorkflows-VM-201501.tar. Unzipping this again is needed to obtain the folder with virtual machine files.
2. When I first opened the virtual machine. I received the error "Failed to open a session for the virtual machine ... Implementation of the USB 2.0 controller not found!
   To resolve this I went to settings USB and unchecked the Enable USB 2.0 EHCI Controller that was checked by default. Then the machine launched.
   

Hello,
I've meen following the RHESSysWorkflows provided and reached the point where I need to Acquire terrain data from U.S. Geological Survey .. however, when I enter the prompt ""GetUSGSDEMForBoundingbox.py -p standard"" it shows an error message that the command not found. How can I solve this?

UPDATE ::

I used the command prompt "sudo pip install rhessysworkflows --upgrade --force-reinstall" and then previous command became available. However, now I am receiveing a new error message:

Since I am using the virtual machine provided by "UNC RHESSys workshop – April 2014" PDF file, I assumed that everything should be installed already. Nonetheless, I tried to start the instalation from the beginning and was faced with another error messages that goes in the lines of "access denied" and "are you root?".

Please help me solve my issue!

Non-file parameters, such as CreateGRASSLocationFromDEM.py's -d option, are expended into absolute paths if they happen to match the name of a file/directory name in the current directory.

In ImportRHESSysSource, ParamDB can only be obtained from GitHub at this point. To allow for customized workflows, users must be able to use their own local copies of the ParamDB database.

The DEM Explorer service queried by GetDEMExplorerDEMForBoundingbox occasionally goes down for maintenance. In such cases, queries for DEM data may result not in a binary DEM, but in an XML error message such as:

Can not read the source DEM files. The errors were caused by failed RAID connection or incorrect configration.

Current, such an error causes GetDEMExplorer... to fail with the following unhelpful error:

ERROR 4: `/Users/miles/Dropbox/EarthCube-Multilayered/RHESSys-workflow/scratchspace/standard/DEM-TEMP.tif' not recognised as a supported file format.

Traceback (most recent call last):
File "/Users/miles/Dropbox/EarthCube-Multilayered/RHESSys-workflow/eclipse/EcohydroWorkflowLib/bin/GetDEMExplorerDEMForBoundingbox.py", line 153, in
demSrs = getSpatialReferenceForRaster(tmpDEMFilepath)
File "/Users/miles/Dropbox/EarthCube-Multilayered/RHESSys-workflow/eclipse/EcohydroWorkflowLib/ecohydrolib/spatialdata/utils.py", line 747, in getSpatialReferenceForRaster
return (pixelWidth, pixelHeight, linearUnitsName, linearUnitsConversionFactor, pszProjection, epsgStr)
UnboundLocalError: local variable 'epsgStr' referenced before assignment

Instead of failing like this, GetDEMExplorerDEM... should check the content type of the data returned and report the appropriate error to the user.

Add script RunGRASSCmd.py, that would allow you to run GRASS commands against the GRASS location and mapset associated with your project directory, without having to start up GRASS.

Traceback (most recent call last): File "/usr/local/bin/PatchToCumulativeMap.py", line 359, in <module> ax.legend( data_plt, args.outputFile, 'upper left', fontsize='x-small', ncol=1, frameon=False) File "/usr/local/lib/python2.7/site-packages/matplotlib/axes/_axes.py", line 536, in legend raise TypeError('Invalid arguments to legend.') TypeError: Invalid arguments to legend.

Add support for parameterizing green infrastructure for a RHESSys model via GI Notebook.

RunLAIRead is currently limited to point time series data.

Add ability to incorporate percent impervious data from NLCD into world files, setting the Ksat vertical multiplier.