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sea200k's Projects

hifiasm icon hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

introtodatascience icon introtodatascience

GitHub Repository to accompany my YouTube series of videos on Introductory Data Science using R.

memusg icon memusg

A 'time'-like utility for Unix that measures peak memory usage

mosuma_tools icon mosuma_tools

A perl script pipeline for the compilation of molecular supermatrices for phylogenetic inference..

msmc icon msmc

Implementation of the multiple sequential markovian coalescent

my-r icon my-r

a small collection for my R scripts

ngsplot icon ngsplot

Quick mining and visualization of NGS data by integrating genomic databases

poplddecay icon poplddecay

PopLDdecay: A new simple and efficient software for Linkage Disequilibrium Decay analysis based Variant Call Format

psmc icon psmc

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

quickmerge icon quickmerge

A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.

rna-sequencing icon rna-sequencing

Repository containing all custom pipeline, perl scripts and R scripts used for RNA-sequencing data analyses

supersmart icon supersmart

Self-Updating Platform for the Estimation of Rates of Speciation, Migration And Relationships of Taxa

svmu icon svmu

A program to call variants from genome alignment

systemsgenetics icon systemsgenetics

Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool

taxonkit icon taxonkit

Cross-platform and Efficient NCBI Taxonomy Toolkit

tfforge icon tfforge

Identifying transcription factors involved in phenotypic differences between species

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