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License: GNU General Public License v3.0
Python code for running single file and multi-file LDA
License: GNU General Public License v3.0
Check standards matches
We had a problem with some data in which the mzml parser couldn't find the name 'mslevel' in one of the scans. The pymzml documentation says we can use either names or accessions. The accession for mslevel is:
MS:1000511
So we should perhaps change the loader to use this as I think this will always be present...
Should be a case of changing one line...
Manually add file names and topic index / metadata to run dictionaries.
Check topic metadata saved in dictionary.
At the moment, all pre-supplied fixed topics are loaded. There should be a filter, and only topics are kept if the total probability of the matched features exceeds some threshold.
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