scilifelabdatacentre Goto Github PK

ena-upload-cli

ENA upload tool - script your Open Data upload to the European Nucleotide Archive

form-manager

A simple system for receiving form submissions.

forwarder

Simple system for url forwarding

iab_2021

This will be the repository for the scripts developed for use in the IAB 2021 report

iab_reports

Repository with all information about IAB reports from 2023

infra_one_pagers

Repository for one-pagers related to infrastructure units

infrastructure_survey

lunch-menu

Menu parser for the restaurants near SciLifeLab in Solna and Uppsala

molgenis-app-scd

Vue application for Molgenis used for the Swedish COVID-19 Sample Collection Database -https://biobanks.covid19dataportal.se

oidc-demo

Simple Flask server using OpenID Connect for login

orderportal

A portal for orders (requests, project applications, etc) to a facility from its users.

precision-medicine-portal

precision-medicine-portal-frontend

React project for the frontend of the Precision Medicine Portal by DC Data Science Node

presentation-template-latex

proposal-word-clouds

Simple script to generate word clouds for the proposals

publication_reporting

Set of python scripts that generate publications visualisation for SciLifeLab reporting reasons

publications

A web-based publications reference database system.

rdm-guidelines

This is the repository for SciLifelab Research Data Management (RDM) guidelines, a central resource to provide information about data management.

reference-files

Files to use as reference for e.g. Dockerfiles and Github workflows

scilifelab-data-guidelines

SciLifeLab Data Guidelines

scilifelab-data-repository-api-examples

Collection of example scripts for interacting with the SciLifeLab Data Repository (https://scilifelab.figshare.com) using the API.

scilifelab-data-repository-das

Data Access Statement generator for the SciLifeLab Data Repository for proof of concept. This is a part of ongoing work on data access statements for the SciLifeLab Data Repository.

seek

For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.

serve-charts

Scaleout Helm Chart Repository

serve-charts-old

Scaleout Helm Chart Repository

serve-images

All files related to images used in Serve

serve-tutorials

Tutorials for running applications on Scilifelab Serve.

sftp-geesefs-butane

Butane configuration for a Fedora CoreOS SFTP server using S3 buckets mounted by geesefs

shiny-adhd-medication-sweden

Dashboard visualising ADHD medication collection among girls and boys (0-19 year olds) in Sweden over time.

stackn

SciLifeLab Serve is a platform offering machine learning model serving, app hosting (Shiny, Streamlit, Dash, etc.), and other tools to life science researchers affiliated with a Swedish research institute.