Comments (6)
ctralie
commented on June 1, 2024
3
Fixed in newest release
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HapeFs
commented on June 1, 2024
I have since solved the issue with help from a previous post on this page.
If one adds
#include <limits>
in the file ripser.cpp the installation should go correctly then.
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lizliz
commented on June 1, 2024
I was able to successfully install using this trick but then can't import in python. I get the following in
In [1]: import ripser
---------------------------------------------------------------------------
ImportError Traceback (most recent call last)
<ipython-input-1-0f76cfc72a4f> in <module>
----> 1 import ripser
~/Programs/ripser.py/ripser/__init__.py in <module>
----> 1 from .ripser import *
2
3 from ._version import __version__
~/Programs/ripser.py/ripser/ripser.py in <module>
32 from sklearn.metrics.pairwise import pairwise_distances
33
---> 34 from pyRipser import doRipsFiltrationDM as DRFDM
35 from pyRipser import doRipsFiltrationDMSparse as DRFDMSparse
36
ImportError: /home/liz/Programs/anaconda3/lib/python3.9/site-packages/pyRipser.cpython-39-x86_64-linux-gnu.so: undefined symbol: _ZSt28__throw_bad_array_new_lengthv
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ctralie
commented on June 1, 2024
Wow this is a pain! Just wanted to acknowledge that I got this, though
it's a rough time in the semester for me and I won't be able to fix it
right away. @sauln Can you have a look at this?
…On Tue, Apr 26, 2022 at 3:56 PM Elizabeth Munch ***@***.***> wrote:
I was able to successfully install using this trick but then can't import
in python. I get the following in
In [1]: import ripser
---------------------------------------------------------------------------
ImportError Traceback (most recent call last)
<ipython-input-1-0f76cfc72a4f> in <module>
----> 1 import ripser
~/Programs/ripser.py/ripser/__init__.py in <module>
----> 1 from .ripser import *
2
3 from ._version import __version__
~/Programs/ripser.py/ripser/ripser.py in <module>
32 from sklearn.metrics.pairwise import pairwise_distances
33
---> 34 from pyRipser import doRipsFiltrationDM as DRFDM
35 from pyRipser import doRipsFiltrationDMSparse as DRFDMSparse
36
ImportError: /home/liz/Programs/anaconda3/lib/python3.9/site-packages/pyRipser.cpython-39-x86_64-linux-gnu.so: undefined symbol: _ZSt28__throw_bad_array_new_lengthv
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redet-G
commented on June 1, 2024
I created a new environment with python 3.8 and the installation was successful but then I cannot import it either.
ModuleNotFoundError: No module named 'ripser'
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ismailguzel
commented on June 1, 2024
I tried to fix version problems with a new environment for Topological Data Analysis tools which has a lot of packages. I hope it will help the version issues. YML file is here
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Related Issues (20)
- Issue with plotting dependencies import HOT 7
- ValueError: numpy.ndarray size changed, may indicate binary incompatibility. HOT 7
- Build failure on GNU/Linux (GCC 11.1.0 and Python 3.9.6 on Arch Linux) HOT 3
- Jupyter notebook crash on input of large sparse distance matrix HOT 1
- [Suggestion] Throw exception when computing bottleneck distance
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- Failed building wheel for Ripser on Win11 HOT 3
- ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject HOT 1
- Failed building wheel for ripser HOT 1
- Failing to generate H1 result with small dataset. HOT 1
- A potential issue with the `lower_star_img` function with negative numbers HOT 9
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