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Scikit-TDA is a home for Topological Data Analysis Python libraries intended for non-topologists.

This project aims to provide a curated library of TDA Python tools that are widely usable and easily approachable. It is structured so that each package can stand alone or be used as part of the scikit-tda bundle.

Documentation

For complete documentation please checkout docs.scikit-tda.org.

Contact

If you would like to contribute, please reach out to us on github by starting a discussion topic, creating an issue, or reaching out on twitter.

Setup

To install all these libraries

    pip install scikit-tda

Citations

If you would like to cite Scikit-TDA, please use the following citation/bibtex

Saul, Nathaniel and Tralie, Chris. (2019). Scikit-TDA: Topological Data Analysis for Python. Zenodo. http://doi.org/10.5281/zenodo.2533369

@misc{scikittda2019,
  author       = {Nathaniel Saul, Chris Tralie},
  title        = {Scikit-TDA: Topological Data Analysis for Python},
  year         = 2019,
  doi          = {10.5281/zenodo.2533369},
  url          = {https://doi.org/10.5281/zenodo.2533369}
}

License

This package is licensed with the MIT license.

Contributing

Contributions are more than welcome! There are lots of opportunities for potential projects, so please get in touch if you would like to help out. Everything from code to notebooks to examples and documentation are all equally valuable so please don't feel you can't contribute. To contribute please fork the project make your changes and submit a pull request. We will do our best to work through any issues with you and get your code merged into the main branch.

Scikit-TDA's Projects

.github icon .github

Community health files for Scikit-TDA

cechmate icon cechmate

Custom filtration constructors for Python

dreimac icon dreimac

Dimensionality Reduction with Eilenberg-MacLane Coordinates

kepler-mapper icon kepler-mapper

Kepler Mapper: A flexible Python implementation of the Mapper algorithm.

persim icon persim

Distances and representations of persistence diagrams

pervect icon pervect

Vectorization of persistence diagrams and approximate Wasserstein distance

ripser.py icon ripser.py

A Lean Persistent Homology Library for Python

tadasets icon tadasets

Synthetic data sets apt for Topological Data Analysis

umap icon umap

Uniform Manifold Approximation and Projection

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