scaramir / orgaseg Goto Github PK
View Code? Open in Web Editor NEWPipeline meant to segment and classify organoids, or any other blob-like structures (star-convex polygons). Microscopy images can be easily annotated in QuPath and automatically processed afterwards to count the class distribution within each image using this pipeline (TIF files will be converted to grayscale)
License: GNU Affero General Public License v3.0