Docker directory issue about introgressionbrowser HOT 5 CLOSED

Hello Colin,
Could you try to run it WITHOUT the following parameters:
-v $PWD/access.log:/var/log/apache2/access.log
-v $PWD/error.log:/var/log/apache2/error.log

OR delete the created folders (access.log, error.log) and create the files:
touch error.log
touch access.log

from introgressionbrowser.

Thanks. I deleted the folders, and created the two files with touch.
This error disappeared, yet I seem to have problems accessing the server. Will troubleshoot here with our admin.

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It seems to be that the server has not started (timeouts via webbrowser, no activity on docker container)

I copied the config.template to the directory /var/www/ibrowser/data/ and renamed as config.py.

I then tried to run ibrowser manually with this command:

IMPORTING BEHAVIOUR
IMPORTING FUNCTIONS
importing flask
importing jinja2
importing user database
importing sha3
importing vcf_walk
importing vcf_walk sql
importing image
importing sqlalchemy
SECRET KEY '\xbbd}9\x7f\x0b\xa7\xd6@hF_Be\xe8\xa3\x9f\xe3\xe2\xf5\x18\xab\xc3$'
loading config /var/www/ibrowser/data/config.py
updating key DEBUG from True to False
updating key LIBRE_PATHS from ['/api', '/favicon.ico'] to ['/api', '/favicon.ico']
updating key SERVER_PORT from 10000 to 10000
updating key HAS_LOGIN from False to False
inited

No error messages, but no sign the browser is working.

root@f83a19cf91aa:/var/www/ibrowser# ps
PID TTY TIME CMD
1 ? 00:00:00 bash
38 ? 00:00:00 ps
root@f83a19cf91aa:/var/www/ibrowser# ps -aux | grep py
root@f83a19cf91aa:/var/www/ibrowser# ps -aux | grep ibrowser
root 42 0.0 0.0 6572 660 ? S+ 07:27 0:00 grep --color=auto ibrowser
root@f83a19cf91aa:/var/www/ibrowser# ps -aux | grep rowse
root@f83a19cf91aa:/var/www/ibrowser#

Thanks for your help.
Colin

from introgressionbrowser.

You are right!

I've corrected the the wiki to reflect that:

you need to run:

docker run -it --rm \
-v $PWD/data:/var/www/ibrowser/data \
-p 127.0.0.1:10000:10000 \
--name ibrowser \
sauloal/introgressionbrowser ./ibrowser.py data/

if you run ./ibrowser.py it will create the necessary files to run but will not actually run it

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Did it work?

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