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alicevision

Photogrammetric Computer Vision Framework

allbiovm

Virtual Machine installation files for the hack-a-thon and hands-on-session

arduino

arduino

asuswrt-configs-deobfuscator

Tool to deobfuscate asuswrt configs files

bionanoconverter

cnidaria

CNIDARIA: fast, reference-free phylogenomic clustering

cufflinksviewer

cuff links viewer http://dx.doi.org/10.5281/zenodo.10795

debruijnindex

Generate a deBruijn Sequence that facilitates an efficient decoding algorithm due to J. Tuliani thesis, porting the implementation of jgeisler0303

distk

docker-build-nodejs

docker-codebox

codebox in a container: https://github.com/FriendCode/codebox

dupinator

ec2init

EC2 scripts which auto updates itself from git and runs at startup with the help of minimal user-data and cloud init

fastqcount

Calculates stats from fastq files with automatic quality format inference

flask-restless

A Flask extension for creating simple ReSTful APIs from SQLAlchemy models.

fuse-rest-swagger

fuse filesystem to REST API's which comply with swagger

genotyping_23andme

My raw genotyping data from 23andme

hm1

introgressionbrowser

Introgression browser: high-throughput whole-genome SNP visualization doi: 10.1111/tpj.12800

introgressionbrowser2

Introgression Browser v2.0 - Complete rewrite from the group up of Introgression Browser

ipfs-private-gateway

ipfs-private-gateway

ipython

java

java

jbrowse_httpd

JBrowse instance using Apache web server

jbrowseautomaticinstancecreator

JBrose Automatic Instance Creator

jbrowseplugin

JBrowse plugin to support BioNano Genomics files

jellyfish

A fast multi-threaded k-mer counter

jpy-obdii-torque

Jupyter parser for OBDII-torque log files

jupyter-docker-pymol

Container-based installation of pymol, with interaction through the browser via Jupyter notebook

kentjs

BedTools (http://genome.ucsc.edu/admin/git.html - http://hgdownload.cse.ucsc.edu/admin/jksrc.zip) to javascript using Emscripten (LLVM) in docker (https://github.com/kripken/emscripten)