saraharcos Goto Github PK
Name: Sarah Arcos
Type: User
Company: Lauring Lab
Bio: Postdoctoral Fellow studying RNA virus evolution at the University of Michigan
Twitter: sarah_arcos
Location: Nashville, TN
Name: Sarah Arcos
Type: User
Company: Lauring Lab
Bio: Postdoctoral Fellow studying RNA virus evolution at the University of Michigan
Twitter: sarah_arcos
Location: Nashville, TN
Files to use the online version of UpSet
New analysis of CHIKV data after review. Removes medium confidence dataset and adds additional criteria for "binding proteins"
CLASP in U2OS cells, control or with IFN treatment
Lauring Lab Code Club: Shiny Apps
An example qPCR dataset to use for plotting a standard curve and calculating qPCR efficiency
first repository
Analysis of IAV VIR-CLASP data (limited conditions)
Overlap of PAR-CLIP, RIP-Seq, RNA-Seq and SLAM-Seq to discover the funcitonal targets of RBP ELAVL1 during an innate immune response
Bench Automation
Re-analyzing published m6A-seq and PAR-CLIP data
Adding IDR calculation to the PARpipe published by the Ohler lab: https://github.com/ohlerlab/PARpipe
shiny app for exploring PAR-CLIP data
PARcos but the shiny dashboard version
Weekly meetings to solve common biochem/biology data analysis problems
Simulating data for R fridays. Original datasets will not be posted, only code for simulation
Personal Website
Analysis of VIR-CLASP data
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