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Name: Sandro Valenzuela
Type: User
Name: Sandro Valenzuela
Type: User
16S pipeline based on dada2 including analysis and reports
autoMod is a wrapper for all steps in homology modeling using modeller and their "ready to use" files
Call Core SNP
Giving a contig name and positions (start and end), extractSeq can return the corresponding sequence from your fasta.
Giving genus and specie name, the script give you a complete lineage
getS2 calculate the order parameter for your protein (or range of residues), and you'll get a file like a format "reside value"
Genome-Genome circle synteny
R Shiny application accompanying the paper (unpublished) Evaluation of Computational Methods for Human Microbiome Analysis Using Simulated Data
multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.
This script take your fastas, search for common IDs (ti, acc, gi, gb, emb), get the taxID (or other ID if is missing), and finally create a new fasta with the new entries.
an script for convert pathoscope2 output in biom format
Plot your gbk in an standard circular plot.
remove my sequence is tool where you can remove a subsequence from your target sequence, it means giving a protein sequence, the tool will search for the corresponding match on your fasta target and then remove the match.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.