Comments (3)
eppinglen
commented on August 14, 2024
Thank you for reporting. The error has been fixed.
However, I would recommend you to use the database, thats provided in this repository.
It includes a couple of recently discovered serotypes.
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tseemann
commented on August 14, 2024
I wasn't aware a database was included?
The docs seem to tell me about getPneuomoCat as the first thing.
How do we use it?
Could you add some example command lines and an example contigs file to run it on?
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eppinglen
commented on August 14, 2024
Since version 0.1.3 we includes an extended database with novel serotypes.
(added serotypes: 6G, 6F, 11E, 10X, 39X and two NT references)
For a practical exercise with SeroBA, please have look here: https://github.com/sanger-pathogens/pathogen-informatics-training
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Related Issues (20)
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