Comments (3)
eppinglen
commented on August 14, 2024
Hi,
which Version of SeroBA are you using? Did you download the database from this git repository or did you use the build in function of SeroBA?
Best,
Lennard
from seroba.
km-bit
commented on August 14, 2024
Hey Lennard,
The version is 1.0.0 and I downloaded the database from the git repository. But I think the error handled itself, because yesterday my system crashed and after reinstalling seroba again from source it cannot find the command seroba. I guess I have to figure that out first.
But thank you for the quick response!
Karsten
from seroba.
eppinglen
commented on August 14, 2024
The latest version of ARIBA (prepareref) seems to create an odd output of the cdhit_cluster.tsv. This leads to problems with the prediction for some serotypes.
The current solution would be to downgrade ARIBA (e.g. version 2.11.1). Afterwards the database has to be rebuild.
from seroba.
Related Issues (20)
- "Bash Run_nucmer.sh" Error HOT 3
- Make a git tag for 1.0.2 ? HOT 2
- Typo in docs
- gzip: No such file or directory HOT 3
- 11A/11C Misidentification HOT 4
- Default for runSerotyping coverage not being set correctly HOT 1
- Got an error massage through docker with Ubuntu20.04 LTS HOT 1
- biopython issue!
- Can't build the ariba database HOT 1
- Dependencies issues when using seroba through conda HOT 7
- latest build on docker hub is non functional
- Conda install 'createDBs' and 'getPneumocat' errors HOT 1
- Hi..any suggestions on how this error was resolved for you? HOT 1
- serotyping from assemblies as input HOT 3
- Seroba test error while installed with conda
- Error: HOT 1
- Names for forwards and reverse reads does not match. Cannot continue HOT 1
- Job runs for 17+ hours without completion
- Swiss_NT HOT 1
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