salishseacast / sog-initial Goto Github PK
View Code? Open in Web Editor NEWCompanion initialization files for the Fortran SOG biophysical model of deep estuaries
Companion initialization files for the Fortran SOG biophysical model of deep estuaries
===================================================== Strait of Georgia Initialization Data for SOG Code ===================================================== This directory contains initialization data files for the SOG code for runs in the Strait of Georgia. The files are of 3 types, stored in separate sub-directories: * ctd - CTD profiles with SOG code readable headers * stratogem_nuts - Interpolated data from STRATOGEM cruise bottle casts with SOG code readable headers * bottle_data - IOS bottle data with SOG code readable headers File Name Conventions ===================== The CTD data files are named according to the pattern: ``SG-ss-yyyy-mm-dd.sog`` where * ``SG`` indicates that the file is from Strait of Georgia * ``ss`` is the station id at which the data was collected; e.g. S3 * ``yyyy`` is the year part of the date on which the data was collected * ``mm`` is the month part of the date on which the data was collected * ``dd`` is the day part of the date on which the data was collected * ``.sog`` indicates that the file has been formatted with a SOG code readable header So, the CTD data file used to intialize the R4 run is ``ctd/SG-S3-2004-10-19.sog``. Data in ``SG-*.sog`` files can come from STRATOGEM cruise CTD casts, or from IOS cruises. The STRATOGEM cruise bottle data files are named according to the pattern: ``Nuts-ss-yyyy-mm-dd.sog`` where * ``Nuts`` indicates that the data is interpolated from STRATOGEM cruise bottle casts * ``ss`` is the station id at which the data was collected; e.g. S3 * ``yyyy`` is the year part of the date on which the data was collected * ``mm`` is the month part of the date on which the data was collected * ``dd`` is the day part of the date on which the data was collected * ``.sog`` indicates that the file has been formatted with a SOG code readable header So, the Nuts data file used to intialize the R4 run is ``stratogem_nuts/Nuts-S3-2004-10-19.sog``. Data in ``Nuts-*.sog`` files is produced by processing STRATOGEM bottle data files with the ``bottle.m`` and ``nuts_profile.m`` MATLAB scripts (see below). The IOS bottle data files are named according to the pattern: ``btl-ss-yyyy-mm-dd.sog`` where * ``btl`` indicates that the data is from IOS cruise bottle casts * ``ss`` is the station id at which the data was collected; e.g. S3 * ``yyyy`` is the year part of the date on which the data was collected * ``mm`` is the month part of the date on which the data was collected * ``dd`` is the day part of the date on which the data was collected * ``.sog`` indicates that the file has been formatted with a SOG code readable header IOS bottle data is used to initialize runs from before and after the STRATOGEM project data collection period, i.e. before 2002 and after 2004. So, the bottle data file used to intialize the R1 run is ``bottle_data/btl-S3-2001-mm-dd.sog``. SOG Code Readable Header Format =============================== The SOG code readable header is 12 lines long. The first 11 lines start with an ``!`` character and are intended for human consumption: * Line 1 gives the column numbers and their widths in the form ``---n---`` where the total number of characters is the column width, and ``n`` is the column number * Lines 2 through 9 hold text descriptions of the column contents * Line 10 indicates the column widths again as groups of ``-` characters, separated by spaces * Line 11 is `` ! Depth Temp Sal Chlor Fluores Nitrate Phyto Silicon`` where the words are data identifiers that must be in the order shown * Line 12 is a list of integers indicating in which column the data items listed in line 11 appear. If the data item is not included in the file, or is not to be used from the file its index is set to ``-1``. Here is an example of a header from a STRATOGEM CTD profile file:: !--2--- ---3---- --4--- ---5--- --6--- ---7---- --8--- ---9--- ---10--- !Pressu Temperat Conduc Fluores Beam PAR Oxygen: Salinity Density !re ure: tivity cence: Transm Dissolv :T0:C0 ! Primary URU: ed:SBE ! Seapoin ! t ! ! ! !------ -------- ------ ------- ------- -------- ---- ! Depth Temp Sal Chlor Fluores Nitrate Phyto Silicon 2 3 9 -1 5 -1 -1 -1 Data File Processing Scripts ============================ The following MATLAB scripts process data files into into the formats found in this directory. ``bottle.m`` ------------ ``bottle.m`` reads the bottle data files in the shared directory ``/ocean/shared`` and saves the S3 data in ``nuts.mat`` ``nuts_profile.m`` ------------------ ``nuts_profile.m`` reads nuts.mat and interpolates the values onto a 0-40 m depth interval at 0.5 m increments. It writes out the ascii files ``Nuts_cruiseid.txt`` which include three columns depth nitrate silicon (m) (uM) (uM)
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.