NEMO command processor, a command line tool for doing various operations associated with the running NEMO (and other) ocean models. This an extensible tool built on the OpenStack cliff (Command Line Interface Formulation Framework) package. As such, it can be used as the basis for a NEMO domain-specific command processor tool.
Home Page: https://nemo-cmd.readthedocs.io/en/latest/
License: Apache License 2.0
![dependabot[bot] avatar](https://avatars.githubusercontent.com/in/29110?v=4 "dependabot[bot]")
Reusable workflows are in UBC-MOAD/gha-workflows
.github/dependabot.yaml to check for action version updated and generate PRsenvironment-test.yamlcodeql-analysis.yamldocs-linkcheck.yamlpytest-coverage.yamlOriginal report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
Known problem stanzas:
forcing:restart:vcs revisions: hg:Original report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
So that it can be used by packages like SalishSeaCmd that extend NEMO-Cmd to confirm the existence of the rebuild_nemo tool executable during run preparation.
See issue #19 and https://bitbucket.org/salishsea/salishseacmd/issues/4
Original report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
sphinx-rtd-theme has change styling of :kdb: items to look like a keycap. That is not appropriate for things like machine names; e.g. :kbd:'salish'.
Original report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
Original report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
This comes up if GoMSS nowcast runs have to be repeated. Not sure if it is a bug or a safety feature since it (annoyingly) prevents overwrites.
Original report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
Requested by @mdunphy
Original report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
Most packages can be replaced by mock directives in conf.py.
Original report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
Original report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
Seen when helping Idalia get running on orcinus.
Original report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
Original report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
Original report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
Now that we can use conda envs with --user package installation on HPC clusters (sockeye, graham, optimum) we should have an environment description that provides just the required for installation dependencies (unlike the dev, test & rtd envs).
environment-hpc.yaml fileOriginal report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
If bash is to be used, need to use $HOME rather than $PBS_O_HOME in run script.
Original report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
Original report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
Original report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
Original report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
Original report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
Original report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
Might be a Python 2.7 issue - seen while helping Idalia get running on orcinus.
Original report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
The NEMO CONFIG/cfg.txt and TOOLS/COMPILE/full_key_list.txt files change when configs or tools are built, but the changes are generally of no consequence (e.g. line order changes).
So, they should be ignored by the VCS revision and status recording feature.
Proposed by @sea_susanallen
Original report by Doug Latornell (Bitbucket: douglatornell, GitHub: douglatornell).
XIOS-2 produces per-processor xios_client_\d*.[out|err] and per-server xios_server_\d*.[out|err] files.
They need to be concatenated to produce 4 files:
xios_client.stdoutxios_client.stderrxios_server.stdoutxios_server.stderrFor use with XIOS-2 on-the-fly deflation
Port from SalishSeaCmd; see https://bitbucket.org/salishsea/salishseacmd/commits/a263a1ff734a3dda8e1caab4487704296c7740ec
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