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sisso's Introduction

Version SISSO.3.0.2, June, 2020. This code is licensed under the Apache License, Version 2.0

References:
R. Ouyang, S. Curtarolo, E. Ahmetcik, M. Scheffler, and L. M. Ghiringhelli, Phys. Rev. Mater. 2, 083802 (2018).
R. Ouyang, E. Ahmetcik, C. Carbogno, M. Scheffler, and L. M. Ghiringhelli, J. Phys.: Mater. 2, 024002 (2019).

Please use corresponding input templates when switching to a new version. See the wiki page for the list of publications with SISSO for materials discovery.

Installation

A MPI Fortran compiler is needed for the compilation. For example, go to the folder "src" and do
1). mpiifort -fp-model precise var_global.f90 libsisso.f90 DI.f90 FC.f90 SISSO.f90 -o ~/bin/your_code_name
or
2). mpiifort -O2 var_global.f90 libsisso.f90 DI.f90 FC.f90 SISSO.f90 -o ~/bin/your_code_name

Note:

  • option 1) enables better accuracy and run-to-run reproducibility of floating-point calculations; option 2) makes it faster but tiny run-to-run variations may happen between processors of different types e.g. Intel and AMD. Thus, option 1) is recommended if accuracy and reproducibility are more focused than speed.
  • if 'mpi' related errors present during the compilation, please open the file 'var_global.f90' and replace the line " use mpi " with " include 'mpif.h' ". However, " use mpi " is strongly encouraged
    ( https://www.mpi-forum.org/docs/mpi-3.1/mpi31-report/node411.htm).

Modules in the code:

  • var_global.f90 global variables
  • libsisso.f90 library of subroutines and functions
  • DI.f90 for model sparsification
  • FC.f90 for feature construction
  • SISSO.f90

Running SISSO

Input Files: "SISSO.in" and "train.dat". The input templates can be found in the folder "input_template". To run SISSO, put in your job-submission script e.g.: 'mpirun -np xxx SISSO >log ', 'srun SISSO >log', ...

Output:

  • File "SISSO.out": all the information regarding parameter setting, feature space, and the best descriptors/models
  • Folder "models": the top ranked candidate descriptors/models
  • Folder "feature_space": SIS-selected subspaces (feature data and names)
  • Folder "desc_dat": the data for the best descriptors/models
  • Folder "residual": residual data generated at each iteration
  • Files "convex2d_hull" (convex3d_hull): the vertices of the 2D (3D) convex hulls for classification

About

Created and maintained by Runhai Ouyang. Please feel free to open issues in the Github or contact Ouyang
([email protected]) in case of any problems/comments/suggestions in using the code.

Other SISSO codes

MATLAB: https://github.com/NREL/SISSORegressor_MATLAB
Python interface: https://github.com/Matgenix/pysisso

sisso's People

Contributors

rouyang2017 avatar

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