Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data with a stochastic simulator.
- Please visit CellNOptR for details about the project (references, news, ...)
Here CellNOptR-MaBoSS has been implemented within the CellNOptR package. Before starting, make sure you have installed the latest version of R. For more information and download of R, please refer to R project page . For more information about how to install R packages, please refer to Installing packages. These packages rely on several Bioconductor package (e.g., RBGL, graph, methods, etc.). As an example, you can install RGBL package by typing:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RBGL")
Using the devtools
package you can install the latest version from the GitHub repository:
if(!require("devtools")) install.packages("devtools") # installs devtools package if not already installed
devtools::install_github("saezlab/CellNOptR-MaBoSS")
An example about how to run CellNOptR-MaBoSS is provided here.
Feedbacks and bugreports are always very welcomed!
Please use the Github issue page to report bugs or for questions: https://github.com/saezlab/CellNOptR/issues.
Many thanks!