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Welcome to my GitHub Page

About me

She/Her, They/Them

Hi, I'm Sabrina.

  • Former professional Bioinformatician
    • PhD in Evolutionary Genomics.
      • The role genetic exchange and gene flow play in the adaptation of organisms to dynamic environments or situations such as "evolutionary arms-races".
    • Worked as a bioinformatician working on a wide range of problems and projects:
      • Population genomics of fungi using HiFi read data to construct de-novo genomes.
      • Development of a hybrid genome assembler framework.
      • Assembling complex polyploid genomes.
      • Assembling pangenomes.

Highlighted work

Software projects

  • BioJulia - Software infrastructure for Genomics & Bioinformatics
  • HybridCheck - R package for scripting scans for recombination regions in sequences.

SΛBBY's Projects

dsuite icon dsuite

Fast calculation of the ABBA-BABA statistics across many populations/species

ete icon ete

ETE is a Python programming toolkit for building, comparing, annotating, manipulating and visualising trees. It provides both a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

evolver.jl icon evolver.jl

Evolutionary and Population Genetic Simulations in Julia

fishspawn icon fishspawn

A Minitab 12.1 macro written by Cock van Oosterhout to test the repeatability of mate choice

gb-studio icon gb-studio

A free and easy to use retro adventure game creator for your favourite handheld video game system

general icon general

The official registry of general Julia packages

github.jl icon github.jl

A Julia package for interfacing with GitHub

gitter icon gitter

Discuss and file Gitter issues here

glitch-this icon glitch-this

:camera: Glitchify images and GIF - with highly customizable options!

hybridcheck icon hybridcheck

**THIS IS MY PERSONAL FORK, GO TO vanOosterhoutLab/HybridCheck**

hybridcheckapp icon hybridcheckapp

Web App using for using the Hybrid-Check R package without coding.

jlcode icon jlcode

A latex package for displaying Julia code with the listings package

keybase-gpg-github icon keybase-gpg-github

Step-by-step guide on how to create a GPG key on keybase.io, adding it to a local GPG setup and use it with Git and GitHub.

kmc icon kmc

Fast and frugal disk based k-mer counter

kmers.jl icon kmers.jl

In development: Kmer types and methods for julia!

krakenuniq icon krakenuniq

🐙 Metagenomics classifier with unique k-mer counting for more specific results

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