scFlowPy is a helper package to bridge scFlow with the Python ecosystem. A typical use case is to allow tertiary scRNAseq analyses on scFlow outputs using Python tools (e.g. Tensorflow, PyTorch, Scanpy, and others).

The core function currently is provided by read_sce(), allowing users to read any SingleCellExperiment object output by scFlow (or by the nf-core/scflow pipeline) into the Annotated data (AnnData) format.

• Free software: GNU General Public License v3
• Documentation: https://scflowpy.readthedocs.io.

Written by Dr Combiz Khozoie for The Department of Brain Sciences, Imperial College London.