├── Data          # Primary data
│   ├── Shivta_site_silva.nrv119.taxonomy
│   ├── Shivta_site_otuTab2.txt
│   ├── Shivta_metadata.csv
│   └── Shivta_site_otuReps.filtered.align.treefile
├── LICENCE            # Copyright information
├── README.md          # Overview of the repo
├── references.bib          # Bibtex formatted refereces cited in the RMD file
├── Results         # Result files generated while running the RMD file
├── BRC_growth_rate_microbiome_analysis.Rproj          # R project file
├── BRC_growth_rate_microbiome.html          # HTML output of the RMD file
├── BRC_growth_rate_microbiome.md          # MD output of the RMD file
├── BRC_growth_rate_microbiome.RMD            # Executable R markdown script
└── BRC_growth_rate_generate_OTUS.sh          # Shell excecutable for processing the sequence data