robinweide / tagmeppr Goto Github PK
View Code? Open in Web Editor NEWA computational pipeline to map tagmap-insertions
License: MIT License
A computational pipeline to map tagmap-insertions
License: MIT License
p, q and d's are the same. They do have different counts.
align(exp = x, ref = reference_mm10_SB, cores = 30)
[gzread] Is a directory
[gzread] Is a directory
Error in matrix(if (is.null(value)) logical() else value, nrow = nr, dimnames = list(rn, :
length of 'dimnames' [2] not equal to array extent
🤖 This is caused by F1 being only a directory name. Check during newTagMeppr()
for files existing and being f*q.gz.
Hi Robin,
Can you help me inusing T2T genome assembly for aligning human genome reads? The "BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0" version needs R "4.2", but tagmeppr is not availble for this R version 4.2.
incompatability_of_packages.txt
A compare()
function would be handy to:
results()
) are sample-specificI got e-mailed this issue:
I have preliminary mapping data, but is having trouble running the tagMeppr code. I was able to successfully install the packages and run at R version 4.0.3. But, I am stuck at makeIndex section. While creating tagMepprIndex I am getting this error:
“cannot open file '../premadeReferences/BSgenome.Hsapiens.UCSC.hg19_PiggyBac_tagMeppRindex.fa.gz’”Do you have sometime so show me way forward? I must say that the entire package at gib hub is well documented, but being a novice in R I might be making some trivial mistake.
So numbers whenever a TIS has coverage (regardless of the other primer)
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