Name: Rob Patro
Type: User
Company: University of Maryland
Bio: Working on algorithms, data structures and inference for high-throughput genomics (and other things I find interesting). I prefer my types static!
Location: College Park, MD
Blog: http://www.robpatro.net
Rob Patro's Projects
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
Python implementation of Random Walk with Resistance (RWS) for PPI filtering
A random assortment of utilities for the Scala Language that I use in my projects
A small set of Scala examples & links for a brief Scala introduction given at UMD
Automated Cell Type Annotation
Table of software for the analysis of single-cell RNA-seq data.
Succinct Data Structure Library 2.0
Git mirror for the SeqAn project.
Community-provided extensions to Seurat
:crab: Oxidized Single Cell Experiment
A graph library for scala
Compute and compare MinHash signatures for DNA data sets.
span lite - A single-file header-only version of a C++20-like span for C++98, C++11 and later
Automatically exported from code.google.com/p/sparsehash
A fast, memory efficient hash map for C++
Super fast C++ logging library.
c++ cubic spline library
BD rhapsody sample splitting preprocessing
A compressed, associative, exact, and weighted dictionary for k-mers.
RNA-seq aligner
Statistical computation library for Rust
string_view lite - A single-file header-only version of a C++17-like string_view for C++98, C++11 and later
A repository for generating strobemers and evalaution
Implementing Succinct Data Structures from Sebastiano Vigna(http://sux.di.unimi.it)
React
Typescript
Django
Laravel
Facebook
Microsoft
Google
Alibaba
D3
Tencent