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View Code? Open in Web Editor NEWPOEM in python3
License: GNU General Public License v3.0
POEM in python3
License: GNU General Public License v3.0
Hi,
It seems downloading the COG database during installation of PEOM is not working:
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
Download COG database
Unzip cog fasta and format the file by diamond
gzip: /home/Staff/uqgni1/tools/POEM_py3k/database/cog/cog2014/prot2003-2014.fa.gz: No such file or directory
diamond v0.9.32.133 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org
#CPU threads: 16
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Database input file: /home/Staff/uqgni1/tools/POEM_py3k/database/cog/cog2014/prot2003-2014.fa
Opening the database file... No such file or directory
[0.003s]
Error: Error opening file /home/Staff/uqgni1/tools/POEM_py3k/database/cog/cog2014/prot2003-2014.fa
When I try to run the download manually:
wget ftp://ftp.ncbi.nih.gov/pub/COG/COG2014/data/*2014*
Warning: wildcards not supported in HTTP.
--2020-05-25 17:06:16-- ftp://ftp.ncbi.nih.gov/pub/COG/COG2014/data/*2014*
Resolving proxy.eait.uq.edu.au (proxy.eait.uq.edu.au)... 130.102.71.129
Connecting to proxy.eait.uq.edu.au (proxy.eait.uq.edu.au)|130.102.71.129|:8080... connected.
Proxy request sent, awaiting response... 404 Not Found
2020-05-25 17:06:21 ERROR 404: Not Found.
Could you help troubleshoot?
Cheer!
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