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3d-machine-learning

A resource repository for 3D machine learning

biobeam

GPU accelerated beam propagation tools for biological light tissue simulations

cdvae

An SE(3)-invariant autoencoder for generating the periodic structure of materials [ICLR 2022]

chemical_vae

Code for 10.1021/acscentsci.7b00572, now running on Keras 2.0 and Tensorflow

chemprop

Message Passing Neural Networks for Molecule Property Prediction

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

cs-ftmsi

Enhancing the Throughput of FT Mass Spectrometry Imaging Using Joint Compressed Sensing and Subspace Modeling

czifile

czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html

datasciencecoursera

datasharing

The Leek group guide to data sharing

datsigma

dcv_da

Data analysis pipeline for the single-vesicle MS measurements

deepei

Predicting molecular fingerprint from electron−ionization mass spectrum with deep neural networks

deeppath

Classification of Lung cancer slide images using deep-learning

graph_classification

Learning from graph data using Keras

graphsage

Representation learning on large graphs using stochastic graph convolutions.

icsg3d

Official implementation of "3-D Inorganic Crystal Structure Generation and Property Prediction via Representation Learning" (JCIM 2020)

image-super-resolution

🔎 Super-scale your images and run experiments with Residual Dense and Adversarial Networks.

imaging-mass-spectrometry

Research and Overview

imp_tutorial

Tutorial that demonstrates the modeling of RNA Polymerase II using Electron Microscopy density and chemical crosslinks

in-silico-labeling

Code for In silico labeling: Predicting fluorescent labels in unlabeled images

machine-learning-for-proteins

Listing of papers about machine learning for proteins.

matrec

meister

microms

GUI for performing automatic cell finding and point based registration

mofa

Multi-Omics Factor Analysis

multiscale_analysis

reproducing data analysis for MEISTER

ngl

WebGL protein viewer

open-solution-data-science-bowl-2018

Open solution to the Data Science Bowl 2018

pcamethods

Perform PCA on data with missing values in R