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ROC

Generates ROC curves from bedfiles (.bed)

Usage: ROCCurve.py

For example, 2 experimental groups called "group1" and "group2"

Required folder structure:

True_Positives, False_Positives, True_Negatives, False_Negatives --> group1_1.bed, group1_2.bed, group1_(n).bed --> group2_1.bed, group2_2.bed, group2_(n).bed

Test_data --> group1.bed --> group2.bed

Currently supported .bed file formats:

  • ChIP-R
  • IDR

Warnings:

  1. Currently, the calculation at the base pair level is quite slow. Each of my experimental runs (.bed) are ~10mb in size and the runtime all up was ~60 minutes
  2. Prefix names need to be completely unique (not contain eachother)

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