Generates ROC curves from bedfiles (.bed)
Usage: ROCCurve.py
For example, 2 experimental groups called "group1" and "group2"
Required folder structure:
True_Positives, False_Positives, True_Negatives, False_Negatives --> group1_1.bed, group1_2.bed, group1_(n).bed --> group2_1.bed, group2_2.bed, group2_(n).bed
Test_data --> group1.bed --> group2.bed
Currently supported .bed file formats:
- ChIP-R
- IDR
Warnings:
- Currently, the calculation at the base pair level is quite slow. Each of my experimental runs (.bed) are ~10mb in size and the runtime all up was ~60 minutes
- Prefix names need to be completely unique (not contain eachother)