Code for paper: "Post-hoc Overall Survival Time Prediction from Brain MRI" [arxiv].
pip install git+https://github.com/renato145/posthocos.git
Pytorch model: notebooks/example/trained_model.pth
Check: https://docs.nvidia.com/datacenter/cloud-native/container-toolkit/install-guide.html#docker to use the --gpus flag.
# Build the image:
docker build -t posthocos .
# Run the image:
docker run --rm -it --gpus all -p 8888:8888 -v DATA_PATH:/workspace/notebooks/data posthocos:latestThe Brats2019 data should be inside
DATA_PATH/rawand the code will generate the preprocessed files inDATA_PATH/preprocess.
Please use the following bibtex entry:
@INPROCEEDINGS{hermoza2021posthoc,
author={Hermoza, Renato and Maicas, Gabriel and Nascimento, Jacinto C. and Carneiro, Gustavo},
booktitle={2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI)},
title={Post-Hoc Overall Survival Time Prediction From Brain MRI},
year={2021},
volume={},
number={},
pages={1476-1480},
doi={10.1109/ISBI48211.2021.9433877}}
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