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License: GNU General Public License v2.0
Implementation of the ALERT algorithm for detecting the onset of influenza season.
License: GNU General Public License v2.0
Right now, we examine the 10th to the 60th percentiles. might want more flexibility in the range of percentiles that are explored.
Sometimes, if the minweeks is set high and the start date isn't until late, an error is thrown from ALERT.R, here. It isn't clear to the user what the problem is. clarify it.
## calculate end date
minEndIdx <- idxStartDate + minWeeks - 1
if(minEndIdx > nrow(data)) stop("start date occurred too late")
Add subset option for date and "caseColumn" option for a specified case column.
Sometimes, for datasets with low case counts in particularl it seems, the 10-50th percentile thresholds aren't enough to fully explore the possibilities. See CHCO Enterovirus as an example.
"This year did not meet threshold"...
"Value" section is not correct, looks like duplicated from applyALERT or similar.
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