How to train with conservation (Add parameter -conservation_dir_train) about p2rank HOT 5 CLOSED

Unfortunately currently there is no way how to specify separate conservation directories for training and test datasets. I will add the -conservation_dir_train in the next version.

In the meantime as a workaround you can use one of 2 approaches:

1. create a single directory with conservation scores for both datasets
2. put the conservation score files to the same directory as pdb files

from p2rank.

For the second approach - is it necessary to specify the conservation_dir ?

from p2rank.

from p2rank.

I will keep it open since adding -conservation_dir_train param should be implemented.

from p2rank.

In version 2.2 -conservation_dir param was replaced with -conservation_dirs which can contain multiple directories.

from p2rank.