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rdk avatar rdk commented on May 29, 2024

Fixed on develop branch and will be released in v2.3

Problem was that param value parser expected every list param value to start with '(' and end with ')'.

Workaround for earlier versions is to use parentheses, for example:
-conservation_dirs '(coach420/conservation/e5i1/scores/)'
or for 2 dirs: -conservation_dirs '(coach420/conservation/e5i1/scores/,coach420/conservation/e5i1/scores2/)'

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rdk avatar rdk commented on May 29, 2024

@davidjakubec thanks for the report by the way. I agree that it was very unfortunate in combination with #36 .

To check if conservation is loaded properly it is a good idea to run it first in -fail_fast 1 mode.
Default behaviour is that the program does not fail when conservation score file is not found. The reason is that usually in any bigger dataset there are some chains on which calculation of the conservation fails.

from p2rank.

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