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medical-imaging-datasets

A list of Medical imaging datasets.

mirt

Michigan Image Reconstruction Toolbox (MIRT) - Matlab version

mri-reconstruction

Compressed sensing and machine learning

neutompy-toolbox

Python package for tomographic data processing and reconstruction

niftyrec

NiftyRec is a software toolbox for Tomographic image reconstruction. NiftyRec is written in C and computationally intensive functions have a GPU accelerated version based on NVidia CUDA. NiftyRec includes a Matlab Toolbox and a Python Package that access the low level routines, hiding the complexity of the GPU accelerated algorithms.

nipet

High-throughput PET image reconstruction with high quantitative accuracy and precision

occiput

Occiput.io in an open source software for Tomographic reconstruction based on GPU computing and on Python. The design of occiput.io makes it extremely easy to reconstruct tomographic images starting from the raw data produced by imaging systems: PET, PET-MRI and SPECT. Occiput.io is designed for GPU computing, it’s blazing fast.

occiput-1

Tomographic vision

odl

Operator Discretization Library https://odlgroup.github.io/odl/

odlpet

Bindings for positron emission tomography

omega

Open-source MATLAB/GNU Octave Emission and Transmission Tomography Software

paper-2021-rsta-cil-part-i

pwls-cscgr

Convolutional Sparse Coding for Compressed Sensing CT Reconstruction

pycsalgos

Python Compressed Sensing algorithms

rbagaric.github.io

reproducible-deep-compressive-sensing

Collection of reproducible deep learning for compressive sensing

rsd-engineeringcourse

Course materials for Research Software Engineering course.

sim_and_recon

sirf-exercises

SIRF Training and demonstration material

stir

Software for Tomographic Image Reconstruction

stir-gate-connection

Example files on how to run STIR on GATE data

synerbi_vm

Virtual Machine with pre-installed SyneRBI software

tech-interview-handbook

💯 Curated interview preparation materials for busy engineers

tigre

TIGRE: Tomographic Iterative GPU-based Reconstruction Toolbox

tofrecosimulation

tomopy

Tomographic Reconstruction in Python

tomopy-short-course

Course materials for a 90 minute interactive session for learning to reconstruct three-dimensional images from two-dimensional projections using TomoPy, the open-source Python package for tomographic data processing and image reconstruction.

xstir

STIR interfaces to C, Python and Matlab