Giter Club home page Giter Club logo

conn_tools's Introduction

conn_tools

Some tools born from practical needs during the analysis of ROI-to-ROI functional connectivity using the excellent CONN Toolbox.

1) Extract and plot brain networks connectivity matrix

Automatize the extraction and plotting of brain networks connectivity matrix from CONN results folder, using either Matlab or Python

Script:

MATLAB

extract_correl_mat.m

plot_correl_mat.m

Python

conn_correl_mat.py

2) Plot BOLD denoised timeseries of a pair of ROIs and compute the correlation coefficient

Script:

conn_plot_ts.m

Tutorial & Examples

Please go on my website for some tutorials about these functions

conn_tools's People

Stargazers

 avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar

Watchers

 avatar  avatar  avatar

conn_tools's Issues

Table name error

When we give RowNames and VariableNames for the corr_h, corr_F and corr_p tables so in this case how to tackle the error?
The error that I get is

Error using array2table (line 81)
'SMA r (Juxtapositional Lobule Cortex formerly Supplementary Motor Cortex Right)' is longer than the maximum allowed length for a table variable
name.

Error in ROI_to_CSV_check (line 49)
T_F = array2table(corr_F, 'RowNames',corr_name2, 'VariableNames',corr_name2);

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.