ramonamerong / hladownload Goto Github PK
View Code? Open in Web Editor NEWA tool for downloading HLA alleles, epitopes and frequencies
License: MIT License
A tool for downloading HLA alleles, epitopes and frequencies
License: MIT License
I have been looking for an easy way to download a conversion table of HLA alleles to eplets and I found your website. I tried this command and got an error. Please let me know if you can help. If it is easier, can you just send me a flat file of the table?
(base) jeffrey@MacBook-Pro:~/Downloads> hladownload -E
Loading HLA locus alignments...
Looking for latest IMGT/HLA database version number: 3500
Saving eplets that are present in the specified alleles to 'eplets' (this can take a while)...
Locus DRA does not support eplet output.
Locus DQA2 does not support eplet output.
Retrieving eplets from eplet registry database:
Traceback (most recent call last):
File "/Users/jeffrey/miniconda3/bin/hladownload", line 33, in
sys.exit(load_entry_point('hladownload==1.0', 'console_scripts', 'hladownload')())
File "/Users/jeffrey/miniconda3/lib/python3.9/site-packages/hladownload-1.0-py3.9.egg/hladownload/main.py", line 137, in main
saveEplets(epletOutputFolder, alignmentObject, outputExtension, outputDelimiter, args.all_eplets, epletSupportedLoci)
File "/Users/jeffrey/miniconda3/lib/python3.9/site-packages/hladownload-1.0-py3.9.egg/hladownload/eplet.py", line 257, in saveEplets
for locusGroup, df in retrieveEplets(list(locusGroups)).items():
File "/Users/jeffrey/miniconda3/lib/python3.9/site-packages/hladownload-1.0-py3.9.egg/hladownload/eplet.py", line 80, in retrieveEplets
df.columns = inputTableHeader.values()
File "/Users/jeffrey/miniconda3/lib/python3.9/site-packages/pandas/core/generic.py", line 5588, in setattr
return object.setattr(self, name, value)
File "pandas/_libs/properties.pyx", line 70, in pandas._libs.properties.AxisProperty.set
File "/Users/jeffrey/miniconda3/lib/python3.9/site-packages/pandas/core/generic.py", line 769, in _set_axis
self._mgr.set_axis(axis, labels)
File "/Users/jeffrey/miniconda3/lib/python3.9/site-packages/pandas/core/internals/managers.py", line 214, in set_axis
self._validate_set_axis(axis, new_labels)
File "/Users/jeffrey/miniconda3/lib/python3.9/site-packages/pandas/core/internals/base.py", line 69, in _validate_set_axis
raise ValueError(
ValueError: Length mismatch: Expected axis has 0 elements, new values have 4 elements
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