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a-level-set-method-based-on-additive-bias-correction-for-image-segmentation

Matlab code for the paper: A Level Set Method Based on Additive Bias Correction for Image Segmentation

airdilutionolfactometer

Air dilution olfactometer design

alicat-matlab

Control Alicat flow controllers from MATLAB

at-image

registration playground code

bakingtray

Serial-section automated anatomy extension for ScanImage

ez-mesospim-zoom1

Simple pipeline for handling low zoom mesoSPIM data

ilastik_serial_section

loose collection of functions for assisting processing of mouse brain serial section data with Ilastik

imgzoompan

MATLAB code that provides mouse zoom & pan functionality for 2D images.

lcdmenu

Arduino menu class for LCD character displays

matlab-tilefigures

An easy way to tile figures across the screen, or multiple screens.

matlab-tree

A MATLAB class to represent the tree data structure.

matlab_elastix

MATLAB Elastix wrapper

matlab_wizard

Low-level classes for constructing wizard GUIs in MATLAB

mesospim-control

Image acquisition software for mesoSPIM light-sheet microscopes.

mouse_brain_registration

Geometry Processing of Conventionally Produced Mouse Brain Slice Images

mrubicks

MATLAB Rubik's cube plots

neuropixels_trajectory_explorer

Neuropixels trajectory explorer with the Allen CCF mouse atlas

notboxplot

plots things that are not boxplots

openstage

Arduino-based microscope stage controller

pmt_health_check

pythonator-123

testing package for learning about python packaging

settings_handler

MATLAB class for user settings

shadederrorbar

Produce elegant shaded error bars in MATLAB

sigstar

add significance stars to MATLAB plots

two-photon-toolbox

Basic toolbox for analysis of in vivo 2-photon data. Originally written at Glenn Turner's lab, CSHL, when I was working with flies.

yamlmatlab

Java-based implementation of YAML IO support in MATLAB.