Hello and thank you for using the Single-Cell Portal. We hope the portal will contribute to open science by enabling visualizing and sharing scientific insight and data surrounding single-cell RNA-Seq.

Thank you for being a part of this open science effort!

To visit the portal please go to: https://portals.broadinstitute.org/single_cell

For tutorials and descriptions of files please go to: https://github.com/broadinstitute/single_cell_portal/wiki

Scripts to help when working with data files for the portal are made available in this repo and require Python 3. Using these scripts to verify the format of input files can be found at https://github.com/broadinstitute/single_cell_portal/wiki/File-Definitions.

To get set up to use these scripts:

git clone https://github.com/broadinstitute/single_cell_portal.git
cd single_cell_portal
python3 -m venv env --copies
source env/bin/activate
pip install -r requirements.txt

To report a bug or suggest an improvement please create a new issue at: https://github.com/broadinstitute/single_cell_portal/issues

Email us at [email protected]

Happy Science!!!

The Single-Cell Portal Team