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improved_asgn's Introduction



ASGN

The official implementation of the ASGN model. Orginal paper: ASGN: An Active Semi-supervised Graph Neural Network for Molecular Property Prediction. KDD'2020 Accepted.

Project Structure

  • base_model: Containing SchNet and training code for QM9 and OPV datasets.

  • rd_learn: A baseline using random data selection.

  • geo_learn: Geometric method of active learning like k_center.

  • qbc_learn: Active learning by using query by committee.

  • utils: Dataset preparation and utils functions.

  • baselines: Active learning baselines from google's implementation.

  • single_model_al: contains several baseline models and our method ASGN (in file wsl_al.py)

  • exp: Experiments loggings.

How to learn

  • You need to modify self.PATH in config.py depending on your environment.
1. qm9 download (below link)
https://figshare.com/articles/dataset/Data_for_6095_constitutional_isomers_of_C7H10O2/1057646?backTo=/collections/Quantum_chemistry_structures_and_properties_of_134_kilo_molecules/978904
2. PYTHONPATH=. python utils/pre/qm9_predata.py
3. PYTHONPATH=. python utils/pre/pre_qm.py
4. PYTHONPATH=. python single_model_al/wsl_al.py 

IDEAS

  • Swav
    • Sinkhorn problem end2end 로 바꾸기.
  • Multiple clustering
    • 다양한 기준으로 클러스터링한다?
  • Signal from pseudo label
    • student 성능 기반으로 signal 얻기

improved_asgn's People

Contributors

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Stargazers

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Watchers

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