Comments (3)
wasade
commented on September 14, 2024
2
It hasn't been included as part of the core distribution yet as we're constrained on developer time, but it is planned. Additionally, Deblur was just published a few weeks ago and the last q2 release was at the start of February.
from q2-deblur.
wasade
commented on September 14, 2024
Hi @SilasK, sorry for the confusion there. Primary documentation for Deblur can be found here. It's stubbed out in q2-deblur as this is how it's generally done for the qiime2 plugins right now.
from q2-deblur.
SilasK
commented on September 14, 2024
All the command line parameters supplied to deblur workflow are also working for q2-deblur.
Why is q2 deblur not mentioned as available plug in?
https://docs.qiime2.org/2017.2/plugins/available/
Kind regards
Silas
From: Daniel McDonald [mailto:[email protected]]
Sent: Freitag, 24. März 2017 16:25
To: wasade/q2-deblur <[email protected]>
Cc: SilasK <[email protected]>; Mention <[email protected]>
Subject: Re: [wasade/q2-deblur] Documentation (#29)
Hi @SilasK <https://github.com/SilasK> , sorry for the confusion there. Primary documentation for Deblur can be found here <https://github.com/biocore/deblur> . It's stubbed out in q2-deblur as this is how it's generally done for the qiime2 plugins right now.
—
You are receiving this because you were mentioned.
Reply to this email directly, view it on GitHub <#29 (comment)> , or mute the thread <https://github.com/notifications/unsubscribe-auth/AHLK2ubuufjPpU1nx3dE0EcUBdiyMFX5ks5ro-A7gaJpZM4MoPJ7> . <https://github.com/notifications/beacon/AHLK2s_aR716x_kOZ7wUgQa73ScRofaDks5ro-A7gaJpZM4MoPJ7.gif>
from q2-deblur.
Related Issues (20)
- Missing package data: `/assets/js/*`
- Remove Flask license from project files HOT 1
- Visualizer looks fairly empty HOT 4
- Expose `reference-non-hit.biom`
- Underscore sample IDs HOT 1
- support SampleData[Sequences] as input HOT 3
- Expose `--left-trim-length` in plugin HOT 2
- support `SampleData[JoinedSequencesWithQuality]` as input
- Optionally suppress logfile?
- support viewing of `DeblurStats` type with `qiime metadata tabulate`
- Track number of trimmed reads, and number dropped due to trimming in stats
- new release 1.0.4 HOT 3
- Add citations
- numpy 1.14.3 and scipy 1.1.0 break denoise-* HOT 3
- Underscores in sample IDs breaks the pipeline HOT 1
- Update to latest scipy HOT 3
- --p-sample-stats fails to correctly parse sequence identifiers with a semicolon HOT 1
- A ValueError is missing string formatting HOT 1
- CI Failing to collect tests? HOT 1
- ValueError: Decoded Phred score is out of range [0, 62] HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from q2-deblur.