Name: Daniel McDonald
Type: User
Company: UCSD - Dept. of Pediatrics
Bio: Programmer analyst, Scientific Director (American Gut / Microsetta Initiative) | Knight Lab | UC San Diego Dept. Pediatrics
Twitter: mcdonadt
Location: San Diego, CA
Blog: http://wasade.github.io
Daniel McDonald's Projects
American Gut open-access data and IPython notebooks
The website for the American Gut Project participant portal
Interactive lessons in bioinformatics.
Core repo for
Ariadne, a de Bruijn graph-based program for barcoded read deconvolution
Automated testing system for development versions of QIIME, PyCogent, biom-format, and more.
Conda recipes for the bioconda channel.
The Biological Observation Matrix (BIOM) Format Project
A conda-smithy repository for biom-format.
C bit array structs and methods
A fast and sensitive gapped read aligner
Application controllers for command line bioinformatics applications
Python composable command line utility
conda recipes for bioinformatic tools like blast+, infernal, etc.
The Python programming language
Deblur is a greedy deconvolution algorithm based on known read error profiles.
Accelerated BLAST compatible local sequence aligner.
Source repository for https://docs.qiime2.org
Because everyone needs dotfiles
DuckDB website and documentation
Data, code and analysis results for the Earth Microbiome Project.
Emperor a tool for the analysis and visualization of large microbial ecology datasets
A fast and scalable phylogenetic tree viewer for microbiome data
Python programming toolkit for building, comparing, annotating, manipulating and visualising trees. It provides both a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
Home of information about Maintainerati events.