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ena's Introduction

Ensemble Network Aggregation (ENA)

Ensemble network aggregation is an approach which leverages the inverse-rank-product (IRP) method to combine networks. This package provides the capabilities to use IRP to bootstrap a dataset using a single method, to aggregate the networks produced by multiple methods, or to aggregate the networks produced on different datasets.

Available on CRAN at http://cran.r-project.org/web/packages/ENA/index.html.

Alternatively, you can download the latest build using the devtools package.

library(devtools)
install_github("ENA", "QBRC", subdir="ENA")

ena's People

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ena's Issues

adj2mat Doesn't properly handle matrices

The initial lapply call on adjList in adj2mat creates separate columns for each element in the matrix, which crashes the function. We could just wrap the inner adjList reference in an as.data.frame or, even better, just use the matrix directly after detecting the typeof.

Strict Naming on adj2mat

Is it necessary to have the strict column naming requirements on adj2mat? Since it produces a symmetric matrix, it seems that we could pretty safely interpret 2 and 3 column matrices/data.frames without requiring specific column names.

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