Comments (5)
gingergeeks
commented on May 15, 2024
1
Mike,
Thank you for that trace. I'm now free for a month (Yay !) so I will have more free time. At first glance it looks like gcc is having an issue. What version of gcc are you using and what version of bin-utils are you using (as --version) ? The reason I ask is because I saw similar issues with an older version of binutils and after upgrading my errors went away.
Mark
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gingergeeks
commented on May 15, 2024
Hi Mike,
I'm away from my test box at the moment but I can take a look tomorrow evening. I'm assuming this was with the 14.11.5 version of PySlurm you were using ?
You could try using - python setup.py build --slurm=/usr
Regards
Mark
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MikeDacre
commented on May 15, 2024
No problem. And it is the just a clone of the current git repo (as of two hours ago) that I am using. Using --slurm=/usr gives exactly the same error. I am not sure if it is unable to find the slurm.h file, or if there is something else missing.
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MikeDacre
commented on May 15, 2024
I just tried with the 14.11.5 branch and got a different error:
python setup.py build --slurm-lib=/usr/lib64 --slurm-inc=/usr/include
INFO:root:Info:
INFO:root:Info: Building PySlurm (14.11.5)
INFO:root:Info: ------------------------------
INFO:root:Info:
INFO:root:Info: Cython version 0.23.4 installed
INFO:root:Info: Clean - checking for objects to clean
INFO:root:Info: Clean - removing pyslurm build temp directory ...
INFO:root:Info: Clean - removing pyslurm/pyslurm.c temp file
INFO:root:Info: Clean - removing pyslurm/bluegene.pxi temp file
INFO:root:Info: Clean - completed
INFO:root:Info: Build - Detected Slurm include file version - 0x0e0b08 (14.11.08)
INFO:root:Info: Build - Writing Slurm version to pyslurm/slurm_version.pxi
INFO:root:Info: Build - Generating pyslurm/bluegene.pxi file
running build
running build_py
creating build
creating build/lib.linux-x86_64-2.7
creating build/lib.linux-x86_64-2.7/pyslurm
copying pyslurm/__init__.py -> build/lib.linux-x86_64-2.7/pyslurm
running build_ext
cythoning pyslurm/pyslurm.pyx to pyslurm/pyslurm.c
building 'pyslurm.pyslurm' extension
creating build/temp.linux-x86_64-2.7
creating build/temp.linux-x86_64-2.7/pyslurm
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -I/usr/include -I/usr/include/slurm -fPIC -I/usr/include -I. -I/opt/rh/python27/root/usr/include/python2.7 -c pyslurm/pyslurm.c -o build/temp.linux-x86_64-2.7/pyslurm/pyslurm.o
{standard input}: Assembler messages:
{standard input}:1351: Error: expecting string instruction after `rep'
{standard input}:1356: Error: expecting string instruction after `rep'
error: command 'gcc' failed with exit status 1
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MikeDacre
commented on May 15, 2024
Yes, you were right. I changed the gcc build system on the server to a different version and it compiles fine now. I am having another issue now, but I will open a separate issue for that.
Thanks for your help.
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