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.vim

My personal .vim folder. Uses vim-bundle and pathogen to manage plugins. Not intended for public use, there are better .vimrc files out there; feel free to use it however you please though!

annon_vote

A simple command line and web app to allow anonymous voting.

bilitoolparser

Web app to send structured data to emr.bilitool.org and return an EPIC compatible template

careful_rm

A safe wrapper for rm that adds useful warnings and an optional recycle/trash mode

cdbk

A ZSH plugin to allow easy named directory creation - shortcuts to any directory you want

chatgpt-telegram-bot

🤖 A Telegram bot that integrates with OpenAI's official ChatGPT APIs to provide answers, written in Python

conda_pyenv_switch

A simple zsh function to switch anaconda and pyenv in the PATH

dbsnp

A python interface to a dbSNP database, uses SQLAlchemy

deco

depict

DEPICT code, instructions and an example

dinucleotides

Get dinucleotides and trinucleotides

fyrd

Submit functions and shell scripts to torque and slurm clusters or local machines using python.

grasp

A Simple GRASP (grasp.nhlbi.nih.gov) API based on SQLAlchemy and Pandas

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

kmer_trinucleotide

Compare trinucleotide effects for any list of kmers with wieghts

lanyon

A content-first, sliding sidebar theme for Jekyll.

lddirection

Get information about direction of agreement for any two lists of SNPs, based on LDlink and plink

m4a_to_mp3_podcast

Convert an m4a podcast to mp3 maintaining rss feed structure, works with podcast apps

macs

MACS -- Model-based Analysis of ChIP-Seq

mike_tools

My little python functions that I use often enough to warrant their own repo

minimal-mistakes

:triangular_ruler: A flexible two-column Jekyll theme. Perfect for personal sites, blogs, and portfolios hosted on GitHub or your own server.

nextcloud-snap

☁️📦 Nextcloud packaged as a snap

nvim

My neovim config

openvpn-admin

Install and administrate OpenVPN with a web interface (logs visualisations, users managing...)

pascal

pascal_mod

A version of pascal based on the executable on the website: https://www2.unil.ch/cbg/index.php?title=Pascal

pkgbuild_star_rna-seq

This is the PKGBUILD for the RNA-Seq STAR Aligner

pkgbuild_tophat-bin

Arch Linux PKGBUILD for tophat-bin

python-mode

Vim python-mode. PyLint, Rope, Pydoc, breakpoints from box.

python-pipeline

A python library for creating and managing complex pipelines, like make, but better.